Yes. Out of the 114 victims of extrajudicial killings, five are members of a church of various denominations. The normal tendency of church people is to speak out on behalf of their flock, and there seems to be resentment on the part of public officials and the military for advocacies from religious groups on that.
If you look at the current conditions in the Philippines, the Catholic and Protestant churches are very much against the current mining being undertaken in the Philippines. That probably also earned the ire of certain elements who attack and harass members of religious groups there.