I think a lot of them are just simply these cases of searches, or seeking permission to build a new building. Other cases are situations where people have run afoul of the law because they have government-issued IDs from before that say they're one religion when in fact they're another, or it says they're Sunni but in fact they're Shia.
The focus on the violence makes sense because violence is very serious. The thing that religious minorities are facing day to day is just an onslaught of discrimination and harassment by government authorities.
If you have a church south of Jakarta and you want to expand to a bigger building—you buy a property across town and you want to sell your church to move there—all of a sudden, they tell you that you can't get the permit, you're not allowed to have a church there, and there's all this paperwork. This huge bureaucratic ton of bricks comes down on your head.