Certainly, but that's not entirely accurate: in a majority government, the use of prorogation is less controversial, because it does not tend to be used as a delay tactic, as may be the case in a minority government. Is Parliament seeking a confidence vote, an investigation?
In a majority Parliament, the government is in full control, or just about, of the House's proceedings. Prorogation in that context provides the government with an opportunity to reset its legislative agenda and deliver a throne speech. Although a minority government may prorogue Parliament for the same reasons, the decision tends to arouse more controversy and can be seen as a delay tactic. In a minority Parliament, prorogation is a tool the government can use to protect itself, since the confidence in the government is always more uncertain, if you will.